Pyrrole

  • Origin: DFT optimized structure
  • Dimension: 3

Input File Settings

# Adsorption on Cu(111)
Molecule
    rotationmodus = angle
    rotationangle = 4.0
    fixpointtype = atoms
    fixpointatoms = 3, 4
    structure = .../structure.xyz
End

Coordinate File, Cu(111), flat structure

10
xyz file for pyrrole
N   7.56794   8.33034   9.01478
C   8.70449   7.55773   8.93506
C   8.30387   6.22604   8.84668
C   6.86940   6.21305   8.85184
C   6.44501   7.53688   8.94245
H   7.55869   9.34894   8.96275
H   9.69526   7.99974   8.99005
H   8.96215   5.36132   8.87377
H   6.22759   5.33612   8.88089
H   5.44698   7.96111   9.00395

Coordinate File, Cu(111), upright structure

10
xyz file for pyrrole
N   7.55458    8.82615    9.39651
C   7.55261    7.69036   10.16973
C   7.54694    8.09459   11.49525
C   7.54553    9.51941   11.50825
C   7.55034    9.94756   10.19032
H   7.55995    8.83717    8.37361
H   7.55581    6.70419    9.71308
H   7.54490    7.43486   12.35921
H   7.54176   10.16353   12.38389
H   7.55090   10.94164    9.75118